VolumeProjection3d

Creates a single image containing selected pixels from a volume image.

Access to parameter description

VolumeProjection3d flattens a 3D volume into an image with only two representative dimensions.

Each output pixel is assigned by browsing a selected axis and retaining the value corresponding to a projection criterion; for example, the maximal intensity.

The output image can be considered either as a 2D image or a 3D image.
Choosing a 3D output space is almost relevant for raising ambiguity when the selected axis is not Z and the result has to be displayed in a 3D viewer.
For instance, considering that the projection is performed along X:

If the output space is 2D, the output image has two axes: X and Y. X corresponds to the Y input axis and Y to the Z input axis.
If the output space is 3D, the output image has three axes: X, Y, and Z. The X size is 1. All axis are consistent with the input volume.

An optional output can be enabled to get a map representing the slice index of each selected pixel.
This map is not available in mean projection mode since, in this case, the output value is computed from all browsed intensities.

(a)

(b)

(c)

Figure 1. Mean Intensity projection: (a) The input volume,
(b) the mean projection along the Z axis, (c) mean projection along the Y axis
This algorithm is similar to ImageStackProjection3d, the main differences are:

Only the intensity minimum, maximum, and mean projection modes are available.
The projection axis can be user-defined (X, Y, or Z) and is not necessarily the Z axis.
The output space can be set to 3D to preserve the original coordinate system of the input volume.

See also

ImageStackProjection3d

Function Syntax

This function returns a VolumeProjection3dOutput structure containing the outputImage and outputMapImage output parameters.

// Output structure.
struct VolumeProjection3dOutput
{
    std::shared_ptr< iolink::ImageView > outputImage;
    std::shared_ptr< iolink::ImageView > outputMapImage;
};

// Function prototype.
VolumeProjection3dOutput
volumeProjection3d( std::shared_ptr< iolink::ImageView > inputImage,
                    VolumeProjection3d::AxisDirection axisDirection,
                    VolumeProjection3d::ProjectionMode projectionMode,
                    VolumeProjection3d::DimensionalSpace dimensionalSpace,
                    bool createMapImage,
                    std::shared_ptr< iolink::ImageView > outputImage = NULL,
                    std::shared_ptr< iolink::ImageView > outputMapImage = NULL );

This function returns a tuple containing the output_image and output_map_image output parameters.

// Function prototype.
volume_projection_3d( input_image,
                      axis_direction = VolumeProjection3d.AxisDirection.Z_AXIS,
                      projection_mode = VolumeProjection3d.ProjectionMode.INTENSITY_MEAN,
                      dimensional_space = VolumeProjection3d.DimensionalSpace.SPACE_2D,
                      create_map_image = False,
                      output_image = None,
                      output_map_image = None )

This function returns a VolumeProjection3dOutput structure containing the outputImage and outputMapImage output parameters.

/// Output structure of the VolumeProjection3d function.
public struct VolumeProjection3dOutput
{
    public IOLink.ImageView outputImage;
    public IOLink.ImageView outputMapImage;
};

// Function prototype.
public static VolumeProjection3dOutput
VolumeProjection3d( IOLink.ImageView inputImage,
                    VolumeProjection3d.AxisDirection axisDirection = ImageDev.VolumeProjection3d.AxisDirection.Z_AXIS,
                    VolumeProjection3d.ProjectionMode projectionMode = ImageDev.VolumeProjection3d.ProjectionMode.INTENSITY_MEAN,
                    VolumeProjection3d.DimensionalSpace dimensionalSpace = ImageDev.VolumeProjection3d.DimensionalSpace.SPACE_2D,
                    bool createMapImage = false,
                    IOLink.ImageView outputImage = null,
                    IOLink.ImageView outputMapImage = null );

Class Syntax

// Command constructor.
VolumeProjection3d();

// Get method of the inputImage parameter.
std::shared_ptr< iolink::ImageView > inputImage() const;
// Set method of the inputImage parameter.
void setInputImage( std::shared_ptr< iolink::ImageView > inputImage );

// Get method of the axisDirection parameter.
VolumeProjection3d::AxisDirection axisDirection() const;
// Set method of the axisDirection parameter.
void setAxisDirection( const VolumeProjection3d::AxisDirection& axisDirection );

// Get method of the projectionMode parameter.
VolumeProjection3d::ProjectionMode projectionMode() const;
// Set method of the projectionMode parameter.
void setProjectionMode( const VolumeProjection3d::ProjectionMode& projectionMode );

// Get method of the dimensionalSpace parameter.
VolumeProjection3d::DimensionalSpace dimensionalSpace() const;
// Set method of the dimensionalSpace parameter.
void setDimensionalSpace( const VolumeProjection3d::DimensionalSpace& dimensionalSpace );

// Get method of the createMapImage parameter.
bool createMapImage() const;
// Set method of the createMapImage parameter.
void setCreateMapImage( const bool& createMapImage );

// Get method of the outputImage parameter.
std::shared_ptr< iolink::ImageView > outputImage() const;
// Set method of the outputImage parameter.
void setOutputImage( std::shared_ptr< iolink::ImageView > outputImage );

// Get method of the outputMapImage parameter.
std::shared_ptr< iolink::ImageView > outputMapImage() const;
// Set method of the outputMapImage parameter.
void setOutputMapImage( std::shared_ptr< iolink::ImageView > outputMapImage );

// Method to launch the command.
void execute();

// Property of the inputImage parameter.
VolumeProjection3d.input_image
// Property of the axisDirection parameter.
VolumeProjection3d.axis_direction
// Property of the projectionMode parameter.
VolumeProjection3d.projection_mode
// Property of the dimensionalSpace parameter.
VolumeProjection3d.dimensional_space
// Property of the createMapImage parameter.
VolumeProjection3d.create_map_image
// Property of the outputImage parameter.
VolumeProjection3d.output_image
// Property of the outputMapImage parameter.
VolumeProjection3d.output_map_image

// Method to launch the command.
execute()

// Command constructor.
VolumeProjection3d()

// Property of the inputImage parameter.
VolumeProjection3d.inputImage
// Property of the axisDirection parameter.
VolumeProjection3d.axisDirection
// Property of the projectionMode parameter.
VolumeProjection3d.projectionMode
// Property of the dimensionalSpace parameter.
VolumeProjection3d.dimensionalSpace
// Property of the createMapImage parameter.
VolumeProjection3d.createMapImage
// Property of the outputImage parameter.
VolumeProjection3d.outputImage
// Property of the outputMapImage parameter.
VolumeProjection3d.outputMapImage

// Method to launch the command.
Execute()

Parameters

Class Name	VolumeProjection3d

Parameter Name

Description

Type

Supported Values

Default Value

inputImage

The 3D input image.
Color and grayscale images are accepted. The type of the image can be integer or float.

Image

Grayscale or Multispectral

nullptr

axisDirection

The axis along which slices are projected.
If axis direction is set to X, YZ slices are projected.

X_AXIS	The YZ slices are projected.
Y_AXIS	The XZ slices are projected.
Z_AXIS	The XY slices are projected.

Enumeration

Z_AXIS

projectionMode

The projection criterion (the rule used to transform a stack of pixels into a single pixel).

INTENSITY_MAXIMA	The pixel of highest intensity is selected in the stack. The map output is available with this mode.
INTENSITY_MINIMA	The pixel of lowest intensity is selected in the stack. The map output is available with this mode.
INTENSITY_MEAN	The pixels of the stack are averaged along the selected axis. The map output is not available with this mode.

Enumeration

INTENSITY_MEAN

dimensionalSpace

Define the dimensional space of the output image.
If axis direction is set to X and space to 2D, the output X (resp. Y) axis corresponds to the Y (resp. Z) axis. If axis direction is set to X and space to 3D, the output X axis is one pixel thick.

SPACE_2D	The output image is a 2D image.
SPACE_3D	The output image is a 3D image.

Enumeration

SPACE_2D

createMapImage

This parameter indicates whether the algorithm creates an output map image.
This parameter is ignored in INTENSITY_MEAN projection mode.

Bool

false

outputImage

The output image representing the volume projection according to the selected criterion.
This image can be either 2D or 3D of one pixel thickness in the selected axis direction. Its type is identical to the input image.

Image

nullptr

outputMapImage

Output image indicating the selected plane in INTENSITY_MINIMUM or INTENSITY_MAXIMUM mode (not available in INTENSITY_MEAN mode).
The output map image can be either 2D or 3D of one pixel thickness in the selected axis direction. Its type is integer 32 bits.

Image

nullptr

Object Examples

auto foam = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "foam.vip" );

VolumeProjection3d volumeProjection3dAlgo;
volumeProjection3dAlgo.setInputImage( foam );
volumeProjection3dAlgo.setAxisDirection( VolumeProjection3d::AxisDirection::Z_AXIS );
volumeProjection3dAlgo.setProjectionMode( VolumeProjection3d::ProjectionMode::INTENSITY_MEAN );
volumeProjection3dAlgo.setDimensionalSpace( VolumeProjection3d::DimensionalSpace::SPACE_2D );
volumeProjection3dAlgo.setCreateMapImage( false );
volumeProjection3dAlgo.execute();

std::cout << "outputImage:" << volumeProjection3dAlgo.outputImage()->toString();
std::cout << "outputMapImage:" << volumeProjection3dAlgo.outputMapImage()->toString();

foam = imagedev.read_vip_image(imagedev_data.get_image_path("foam.vip"))

volume_projection_3d_algo = imagedev.VolumeProjection3d()
volume_projection_3d_algo.input_image = foam
volume_projection_3d_algo.axis_direction = imagedev.VolumeProjection3d.Z_AXIS
volume_projection_3d_algo.projection_mode = imagedev.VolumeProjection3d.INTENSITY_MEAN
volume_projection_3d_algo.dimensional_space = imagedev.VolumeProjection3d.SPACE_2D
volume_projection_3d_algo.create_map_image = False
volume_projection_3d_algo.execute()

print( "output_image:", str( volume_projection_3d_algo.output_image ) );
print( "output_map_image:", str( volume_projection_3d_algo.output_map_image ) );

ImageView foam = Data.ReadVipImage( @"Data/images/foam.vip" );

VolumeProjection3d volumeProjection3dAlgo = new VolumeProjection3d
{
    inputImage = foam,
    axisDirection = VolumeProjection3d.AxisDirection.Z_AXIS,
    projectionMode = VolumeProjection3d.ProjectionMode.INTENSITY_MEAN,
    dimensionalSpace = VolumeProjection3d.DimensionalSpace.SPACE_2D,
    createMapImage = false
};
volumeProjection3dAlgo.Execute();

Console.WriteLine( "outputImage:" + volumeProjection3dAlgo.outputImage.ToString() );
Console.WriteLine( "outputMapImage:" + volumeProjection3dAlgo.outputMapImage.ToString() );

Function Examples

auto foam = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "foam.vip" );

auto result = volumeProjection3d( foam, VolumeProjection3d::AxisDirection::Z_AXIS, VolumeProjection3d::ProjectionMode::INTENSITY_MEAN, VolumeProjection3d::DimensionalSpace::SPACE_2D, false );

std::cout << "outputImage:" << result.outputImage->toString();
std::cout << "outputMapImage:" << result.outputMapImage->toString();

foam = imagedev.read_vip_image(imagedev_data.get_image_path("foam.vip"))

result_output_image, result_output_map_image = imagedev.volume_projection_3d( foam, imagedev.VolumeProjection3d.Z_AXIS, imagedev.VolumeProjection3d.INTENSITY_MEAN, imagedev.VolumeProjection3d.SPACE_2D, False )

print( "output_image:", str( result_output_image ) );
print( "output_map_image:", str( result_output_map_image ) );

ImageView foam = Data.ReadVipImage( @"Data/images/foam.vip" );

Processing.VolumeProjection3dOutput result = Processing.VolumeProjection3d( foam, VolumeProjection3d.AxisDirection.Z_AXIS, VolumeProjection3d.ProjectionMode.INTENSITY_MEAN, VolumeProjection3d.DimensionalSpace.SPACE_2D, false );

Console.WriteLine( "outputImage:" + result.outputImage.ToString() );
Console.WriteLine( "outputMapImage:" + result.outputMapImage.ToString() );

VolumeProjection3d

- Function Syntax

+ Class Syntax

Parameters

Object Examples

Function Examples

Function Syntax

Class Syntax