ImageDev

ReconstructionFromMarkers2d

Rebuilds a binary image starting from markers.

Access to parameter description

For an introduction: This algorithm rebuilds a set of objects identified by markers and retrieves only the objects that contain at least one marker.

Successive dilations are performed on the markers, each dilation being followed by an intersection with the original image until convergence (idempotence).
This iterative process is called a geodesic dilation.
It guarantees that a dilated marker will not merge with a particle other than the one it marks.

Geodesic dilation is different from a large dilation of a given size followed by an intersection with the original image because a dilated marker may hit close particles that are not marked for reconstruction. This difference is illustrated in Figure 1.

For example, given an erosion which eliminated the small particles of an image, this algorithm can rebuild the original shapes of the remaining particles if the eroded set is used as the markers. This sequence is called an opening by reconstruction.

<b> Figure 1.</b> Comparison between reconstruction from markers and dilation/intersection
Figure 1. Comparison between reconstruction from markers and dilation/intersection


See also

Function Syntax

This function returns outputImage. 
// Function prototype
std::shared_ptr< iolink::ImageView >
reconstructionFromMarkers2d( std::shared_ptr< iolink::ImageView > inputImage,
                             std::shared_ptr< iolink::ImageView > inputMarkerImage,
                             ReconstructionFromMarkers2d::Neighborhood neighborhood,
                             std::shared_ptr< iolink::ImageView > outputImage = nullptr );
This function returns outputImage. 
// Function prototype.
reconstruction_from_markers_2d(input_image: idt.ImageType,
                               input_marker_image: idt.ImageType,
                               neighborhood: ReconstructionFromMarkers2d.Neighborhood = ReconstructionFromMarkers2d.Neighborhood.CONNECTIVITY_8,
                               output_image: idt.ImageType = None) -> idt.ImageType
This function returns outputImage. 
// Function prototype.
public static IOLink.ImageView
ReconstructionFromMarkers2d( IOLink.ImageView inputImage,
                             IOLink.ImageView inputMarkerImage,
                             ReconstructionFromMarkers2d.Neighborhood neighborhood = ImageDev.ReconstructionFromMarkers2d.Neighborhood.CONNECTIVITY_8,
                             IOLink.ImageView outputImage = null );

Class Syntax

Parameters

Parameter Name Description Type Supported Values Default Value
input
inputImage
The binary mask image constraining reconstruction. Image Binary nullptr
input
inputMarkerImage
The binary marker image containing seeds for reconstruction. It must have the same dimensions and type as the input image. Image Binary nullptr
input
neighborhood
The 2D neighborhood configuration for performing dilations or erosions.
CONNECTIVITY_4 The structuring element is a cross.
CONNECTIVITY_8 The structuring element is a square.
Enumeration CONNECTIVITY_8
output
outputImage
The binary output image. Its dimensions and type are forced to the same values as the input. Image nullptr
Parameter Name Description Type Supported Values Default Value
input
input_image
The binary mask image constraining reconstruction. image Binary None
input
input_marker_image
The binary marker image containing seeds for reconstruction. It must have the same dimensions and type as the input image. image Binary None
input
neighborhood
The 2D neighborhood configuration for performing dilations or erosions.
CONNECTIVITY_4 The structuring element is a cross.
CONNECTIVITY_8 The structuring element is a square.
enumeration CONNECTIVITY_8
output
output_image
The binary output image. Its dimensions and type are forced to the same values as the input. image None
Parameter Name Description Type Supported Values Default Value
input
inputImage
The binary mask image constraining reconstruction. Image Binary null
input
inputMarkerImage
The binary marker image containing seeds for reconstruction. It must have the same dimensions and type as the input image. Image Binary null
input
neighborhood
The 2D neighborhood configuration for performing dilations or erosions.
CONNECTIVITY_4 The structuring element is a cross.
CONNECTIVITY_8 The structuring element is a square.
Enumeration CONNECTIVITY_8
output
outputImage
The binary output image. Its dimensions and type are forced to the same values as the input. Image null

Object Examples

auto polystyrene_sep = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "polystyrene_sep.vip" );

ReconstructionFromMarkers2d reconstructionFromMarkers2dAlgo;
reconstructionFromMarkers2dAlgo.setInputImage( polystyrene_sep );
reconstructionFromMarkers2dAlgo.setInputMarkerImage( polystyrene_sep );
reconstructionFromMarkers2dAlgo.setNeighborhood( ReconstructionFromMarkers2d::Neighborhood::CONNECTIVITY_8 );
reconstructionFromMarkers2dAlgo.execute();

std::cout << "outputImage:" << reconstructionFromMarkers2dAlgo.outputImage()->toString();

polystyrene_sep = imagedev.read_vip_image(imagedev_data.get_image_path("polystyrene_sep.vip"))

reconstruction_from_markers_2d_algo = imagedev.ReconstructionFromMarkers2d()
reconstruction_from_markers_2d_algo.input_image = polystyrene_sep
reconstruction_from_markers_2d_algo.input_marker_image = polystyrene_sep
reconstruction_from_markers_2d_algo.neighborhood = imagedev.ReconstructionFromMarkers2d.CONNECTIVITY_8
reconstruction_from_markers_2d_algo.execute()

print("output_image:", str(reconstruction_from_markers_2d_algo.output_image))

ImageView polystyrene_sep = Data.ReadVipImage( @"Data/images/polystyrene_sep.vip" );

ReconstructionFromMarkers2d reconstructionFromMarkers2dAlgo = new ReconstructionFromMarkers2d
{
    inputImage = polystyrene_sep,
    inputMarkerImage = polystyrene_sep,
    neighborhood = ReconstructionFromMarkers2d.Neighborhood.CONNECTIVITY_8
};
reconstructionFromMarkers2dAlgo.Execute();

Console.WriteLine( "outputImage:" + reconstructionFromMarkers2dAlgo.outputImage.ToString() );

Function Examples

auto polystyrene_sep = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "polystyrene_sep.vip" );

auto result = reconstructionFromMarkers2d( polystyrene_sep, polystyrene_sep, ReconstructionFromMarkers2d::Neighborhood::CONNECTIVITY_8 );

std::cout << "outputImage:" << result->toString();

polystyrene_sep = imagedev.read_vip_image(imagedev_data.get_image_path("polystyrene_sep.vip"))

result = imagedev.reconstruction_from_markers_2d(polystyrene_sep, polystyrene_sep, imagedev.ReconstructionFromMarkers2d.CONNECTIVITY_8)

print("output_image:", str(result))

ImageView polystyrene_sep = Data.ReadVipImage( @"Data/images/polystyrene_sep.vip" );

IOLink.ImageView result = Processing.ReconstructionFromMarkers2d( polystyrene_sep, polystyrene_sep, ReconstructionFromMarkers2d.Neighborhood.CONNECTIVITY_8 );

Console.WriteLine( "outputImage:" + result.ToString() );