ClosestBoundaryPoints3d

Computes the Chamfer distance map of the background of a three-dimensional image and the coordinates of the associated boundary points.

Access to parameter description

This algorithm is like the DistanceMap3d algorithm, applied on the background of the input image, and indicates the distance to the closest object boundary point.
It also stores the X, Y, and Z coordinates of the corresponding point in three additional output images.

Note: This algorithm does not take into account the input image calibration. The output values are systematically indicating distance in voxel units.

See also

Function Syntax

This function returns a ClosestBoundaryPoints3dOutput structure containing outputMapImage, outputImageX, outputImageY and outputImageZ.

// Output structure of the closestBoundaryPoints3d function.
struct ClosestBoundaryPoints3dOutput
{
    /// The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    std::shared_ptr< iolink::ImageView > outputMapImage;
    /// The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    std::shared_ptr< iolink::ImageView > outputImageX;
    /// The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    std::shared_ptr< iolink::ImageView > outputImageY;
    /// The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    std::shared_ptr< iolink::ImageView > outputImageZ;
};

// Function prototype
ClosestBoundaryPoints3dOutput
closestBoundaryPoints3d( std::shared_ptr< iolink::ImageView > inputBinaryImage,
                         std::shared_ptr< iolink::ImageView > outputMapImage = NULL,
                         std::shared_ptr< iolink::ImageView > outputImageX = NULL,
                         std::shared_ptr< iolink::ImageView > outputImageY = NULL,
                         std::shared_ptr< iolink::ImageView > outputImageZ = NULL );

This function returns a tuple containing output_map_image, output_image_x, output_image_y and output_image_z.

// Function prototype.
closest_boundary_points_3d( input_binary_image,
                            output_map_image = None,
                            output_image_x = None,
                            output_image_y = None,
                            output_image_z = None )

This function returns a ClosestBoundaryPoints3dOutput structure containing outputMapImage, outputImageX, outputImageY and outputImageZ.

/// Output structure of the ClosestBoundaryPoints3d function.
public struct ClosestBoundaryPoints3dOutput
{
    /// 
    /// The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    /// 
    public IOLink.ImageView outputMapImage;
    /// 
    /// The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    /// 
    public IOLink.ImageView outputImageX;
    /// 
    /// The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    /// 
    public IOLink.ImageView outputImageY;
    /// 
    /// The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
    /// 
    public IOLink.ImageView outputImageZ;
};

// Function prototype.
public static ClosestBoundaryPoints3dOutput
ClosestBoundaryPoints3d( IOLink.ImageView inputBinaryImage,
                         IOLink.ImageView outputMapImage = null,
                         IOLink.ImageView outputImageX = null,
                         IOLink.ImageView outputImageY = null,
                         IOLink.ImageView outputImageZ = null );

Class Syntax

// Command constructor.
ClosestBoundaryPoints3d();

/// Gets the inputBinaryImage parameter.
/// The binary input image.
std::shared_ptr< iolink::ImageView > inputBinaryImage() const;
/// Sets the inputBinaryImage parameter.
/// The binary input image.
void setInputBinaryImage( std::shared_ptr< iolink::ImageView > inputBinaryImage );

/// Gets the outputMapImage parameter.
/// The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
std::shared_ptr< iolink::ImageView > outputMapImage() const;
/// Sets the outputMapImage parameter.
/// The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
void setOutputMapImage( std::shared_ptr< iolink::ImageView > outputMapImage );

/// Gets the outputImageX parameter.
/// The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
std::shared_ptr< iolink::ImageView > outputImageX() const;
/// Sets the outputImageX parameter.
/// The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
void setOutputImageX( std::shared_ptr< iolink::ImageView > outputImageX );

/// Gets the outputImageY parameter.
/// The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
std::shared_ptr< iolink::ImageView > outputImageY() const;
/// Sets the outputImageY parameter.
/// The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
void setOutputImageY( std::shared_ptr< iolink::ImageView > outputImageY );

/// Gets the outputImageZ parameter.
/// The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
std::shared_ptr< iolink::ImageView > outputImageZ() const;
/// Sets the outputImageZ parameter.
/// The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.
void setOutputImageZ( std::shared_ptr< iolink::ImageView > outputImageZ );


// Method to launch the command.
void execute();

# Property of the inputBinaryImage parameter.
ClosestBoundaryPoints3d.input_binary_image
# Property of the outputMapImage parameter.
ClosestBoundaryPoints3d.output_map_image
# Property of the outputImageX parameter.
ClosestBoundaryPoints3d.output_image_x
# Property of the outputImageY parameter.
ClosestBoundaryPoints3d.output_image_y
# Property of the outputImageZ parameter.
ClosestBoundaryPoints3d.output_image_z

// Method to launch the command.
execute()

// Command constructor.
ClosestBoundaryPoints3d()

// Property of the inputBinaryImage parameter.
ClosestBoundaryPoints3d.inputBinaryImage
// Property of the outputMapImage parameter.
ClosestBoundaryPoints3d.outputMapImage
// Property of the outputImageX parameter.
ClosestBoundaryPoints3d.outputImageX
// Property of the outputImageY parameter.
ClosestBoundaryPoints3d.outputImageY
// Property of the outputImageZ parameter.
ClosestBoundaryPoints3d.outputImageZ

// Method to launch the command.
Execute()

Parameters

	Description	Type	Supported Values	Default Value
inputBinaryImage	The binary input image.	Image	Binary	nullptr
outputMapImage	The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		nullptr
outputImageX	The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		nullptr
outputImageY	The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		nullptr
outputImageZ	The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		nullptr

Description	Type	Supported Values	Default Value
input_binary_image	The binary input image.	image	Binary	None
output_map_image	The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	image		None
output_image_x	The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	image		None
output_image_y	The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	image		None
output_image_z	The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	image		None

Description	Type	Supported Values	Default Value
inputBinaryImage	The binary input image.	Image	Binary	null
outputMapImage	The output background distance map image. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		null
outputImageX	The X coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		null
outputImageY	The Y coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		null
outputImageZ	The Z coordinate image of the closest boundary point, in voxel units. Its dimensions are forced to the same values as the input. Its type is signed 16-bit integer.	Image		null

Object Examples

auto foam_sep = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "foam_sep.vip" );

ClosestBoundaryPoints3d closestBoundaryPoints3dAlgo;
closestBoundaryPoints3dAlgo.setInputBinaryImage( foam_sep );
closestBoundaryPoints3dAlgo.execute();

std::cout << "outputMapImage:" << closestBoundaryPoints3dAlgo.outputMapImage()->toString();
std::cout << "outputImageX:" << closestBoundaryPoints3dAlgo.outputImageX()->toString();
std::cout << "outputImageY:" << closestBoundaryPoints3dAlgo.outputImageY()->toString();
std::cout << "outputImageZ:" << closestBoundaryPoints3dAlgo.outputImageZ()->toString();

foam_sep = imagedev.read_vip_image(imagedev_data.get_image_path("foam_sep.vip"))

closest_boundary_points_3d_algo = imagedev.ClosestBoundaryPoints3d()
closest_boundary_points_3d_algo.input_binary_image = foam_sep
closest_boundary_points_3d_algo.execute()

print( "output_map_image:", str( closest_boundary_points_3d_algo.output_map_image ) )
print( "output_image_x:", str( closest_boundary_points_3d_algo.output_image_x ) )
print( "output_image_y:", str( closest_boundary_points_3d_algo.output_image_y ) )
print( "output_image_z:", str( closest_boundary_points_3d_algo.output_image_z ) )

ImageView foam_sep = Data.ReadVipImage( @"Data/images/foam_sep.vip" );

ClosestBoundaryPoints3d closestBoundaryPoints3dAlgo = new ClosestBoundaryPoints3d
{
    inputBinaryImage = foam_sep
};
closestBoundaryPoints3dAlgo.Execute();

Console.WriteLine( "outputMapImage:" + closestBoundaryPoints3dAlgo.outputMapImage.ToString() );
Console.WriteLine( "outputImageX:" + closestBoundaryPoints3dAlgo.outputImageX.ToString() );
Console.WriteLine( "outputImageY:" + closestBoundaryPoints3dAlgo.outputImageY.ToString() );
Console.WriteLine( "outputImageZ:" + closestBoundaryPoints3dAlgo.outputImageZ.ToString() );

Function Examples

auto foam_sep = readVipImage( std::string( IMAGEDEVDATA_IMAGES_FOLDER ) + "foam_sep.vip" );

auto result = closestBoundaryPoints3d( foam_sep );

std::cout << "outputMapImage:" << result.outputMapImage->toString();
std::cout << "outputImageX:" << result.outputImageX->toString();
std::cout << "outputImageY:" << result.outputImageY->toString();
std::cout << "outputImageZ:" << result.outputImageZ->toString();

foam_sep = imagedev.read_vip_image(imagedev_data.get_image_path("foam_sep.vip"))

result_output_map_image, result_output_image_x, result_output_image_y, result_output_image_z = imagedev.closest_boundary_points_3d( foam_sep )

print( "output_map_image:", str( result_output_map_image ) )
print( "output_image_x:", str( result_output_image_x ) )
print( "output_image_y:", str( result_output_image_y ) )
print( "output_image_z:", str( result_output_image_z ) )

ImageView foam_sep = Data.ReadVipImage( @"Data/images/foam_sep.vip" );

Processing.ClosestBoundaryPoints3dOutput result = Processing.ClosestBoundaryPoints3d( foam_sep );

Console.WriteLine( "outputMapImage:" + result.outputMapImage.ToString() );
Console.WriteLine( "outputImageX:" + result.outputImageX.ToString() );
Console.WriteLine( "outputImageY:" + result.outputImageY.ToString() );
Console.WriteLine( "outputImageZ:" + result.outputImageZ.ToString() );