Interface representing an N dimensional image. More...

#include <iolink/view/ImageView.h>

Inheritance diagram for iolink::ImageView:

Public Member Functions
size_t	dimensionCount ()
	Returns the dimension of the View.

bool	support (ImageCapabilitySet flags)
	Checks if the ImageView supports the given capabilities.

virtual ImageCapabilitySet	capabilities () const =0
	Return the capabilities of this image.

virtual const VectorXu64 &	shape ()=0
	Return the shape of the image, each component containing the size in this dimension. More...

virtual DataType	dataType ()=0
	Return the data type of the samples of this image.

virtual std::shared_ptr< const ImageProperties >	properties ()=0
	Return the view's properties.

std::string	toString () const
	Return a string representation.

virtual std::shared_ptr< const MetadataNode >	metadata () const
	Return the root node of the metadata attached to this image. More...

virtual void	read (const VectorXu64 &index, void *dst)
	Read the data at the given index into a buffer. More...

virtual void	readRegion (const RegionXu64 &region, void *dst)
	Read a region of the image into a buffer. More...

ImageInterpretation	imageInterpretation ()
	Shortcut to access Image interpretation from image properties. More...

ImageType	axesInterpretation ()
	Shortcut to access axes interpretation from image properties. More...

Vector3d	spatialOrigin ()
	Shortcut to access spatial origin from image properties. More...

Vector3d	spatialSpacing ()
	Shortcut to access spatial spacing from image properties. More...

std::string	spatialUnit ()
	Shortcut to access the spatial unit from image properties. More...

const SpatialDirections &	spatialDirections ()
	Shortcut to access spatial directions from image properties. More...

size_t	bitDepth ()
	Shortcut to access the sample bitdepth from image properties. More...

bool	hasAlpha ()
	Shortcut to access hasAlpha status from image properties. More...

Vector2d	valueRange ()
	Shortcut to access the sample value range from image properties. More...

virtual void	setProperties (std::shared_ptr< const ImageProperties > properties)
	Update the image's properties. More...

virtual void	setMetadata (std::shared_ptr< MetadataNode > metadata)
	Attach a new metadata node to the image. More...

virtual void	write (const VectorXu64 &index, const void *src)
	Write value from a buffer at the given index. More...

virtual void	writeRegion (const RegionXu64 &region, const void *src)
	Write a input buffer into a given region of the image. More...

void	setImageInterpretation (const ImageInterpretation interpretation)
	Shortcut to set Image interpretation into image properties. More...

void	setAxesInterpretation (const ImageType type)
	Shortcut to set axes interpretation into image properties. More...

void	setSpatialOrigin (const Vector3d &origin)
	Shortcut to set spatial origin into image properties. More...

void	setSpatialSpacing (const Vector3d &spacing)
	Shortcut to set spatial spacing into image properties. More...

void	setSpatialUnit (const std::string &unit)
	Shortcut to set spatial unit into image properties. More...

void	setSpatialDirections (const SpatialDirections &directions)
	Shortcut to set spatial direcitons into image properties. More...

void	setBitDepth (size_t bitDepth)
	Shortcut to set sample bitdepth into image properties. More...

void	setAlpha (bool value)
	Shortcut to indicate the presence of an alpha channel into image properties. More...

void	setValueRange (const Vector2d &range)
	Shortcut to set sample value range into image properties. More...

virtual void	reshape (const VectorXu64 &shape, DataType dataType)
	Change the shape and sample data type of the image. More...

virtual const Indexer &	indexer ()
	Return an Indexer describing the memory layout of the buffer. More...

virtual void *	buffer ()
	Return a mutable pointer to the internal CPU memory buffer. More...

virtual const void *	bufferReadOnly () const
	Return an immutable pointer to the internal CPU memory buffer. More...

virtual size_t	bufferSize ()
	Size in bytes of the internal CPU buffer. More...

std::shared_ptr< TilingInfoExtension >	tilingInfo ()

std::shared_ptr< ParallelAccessExtension >	parallelAccess ()

Public Member Functions inherited from iolink::View
virtual std::shared_ptr< Extension >	extension (size_t id)
	Get an extension of the view, corresponding to the given identifier. More...

std::shared_ptr< ViewOriginExtension >	viewOrigin ()
	Shortcut to access to ViewOrigin extension.

Detailed Description

Interface representing an N dimensional image.

This class can handle multidimensional image, for example:

A 2D image has 2 dimensions.
A 3D Volume has 3 dimensions.
A 2D time series has 3 dimensions, where 3rd one represent time.

This interface capabilities are indicated by the ImageCapabilitySet returned by the method ImageView::capabilities. Each capability enable the use of a specific set of methods. When one of those methods is called, if its corresponding capability is not supported, a NotImplemented exception will be thrown.

An ImageView is composed of the following parts:

A shape, that describes the size of the dataset along each of its axes.
A data type, giving info on what is stored on each element of the dataset.
Properties, giving generic info on the image, such as its spatial calibration, the semantic of its dimensions, and detailed information on its elements.
Metadata, hierarchical tree of key/value pair, describing arbitrary information.
Image's data itself.

See also: ImageCapability

Member Function Documentation

◆ axesInterpretation()

ImageType iolink::ImageView::axesInterpretation ( )

Shortcut to access axes interpretation from image properties.

Returns: axes interpretation of the image

◆ bitDepth()

size_t iolink::ImageView::bitDepth ( )

Shortcut to access the sample bitdepth from image properties.

Returns: bitdepth of the image

◆ buffer()

virtual void* iolink::ImageView::buffer ( )

virtual

Return a mutable pointer to the internal CPU memory buffer.

Available when the ImageView has the MEMORY_ACCESS capability.

Exceptions

NotImplemented If the implementation does not support memory access.

◆ bufferReadOnly()

virtual const void* iolink::ImageView::bufferReadOnly ( ) const

virtual

Return an immutable pointer to the internal CPU memory buffer.

Available when the ImageView has the MEMORY_ACCESS capability.

Exceptions

NotImplemented If the implementation does not support memory access.

◆ bufferSize()

virtual size_t iolink::ImageView::bufferSize ( )

virtual

Size in bytes of the internal CPU buffer.

Available when the ImageView has the MEMORY_ACCESS capability.

Exceptions

NotImplemented If the implementation does not support memory access.

◆ hasAlpha()

bool iolink::ImageView::hasAlpha ( )

Shortcut to access hasAlpha status from image properties.

Returns: TRUE if image has an alpha channel, FALSE otherwise

◆ imageInterpretation()

ImageInterpretation iolink::ImageView::imageInterpretation ( )

Shortcut to access Image interpretation from image properties.

Returns: interpretation of the image

◆ indexer()

virtual const Indexer& iolink::ImageView::indexer ( )

virtual

Return an Indexer describing the memory layout of the buffer.

Available when the ImageView has the MEMORY_ACCESS capability.

Exceptions

NotImplemented If the implementation does not support memory access.

◆ metadata()

virtual std::shared_ptr<const MetadataNode> iolink::ImageView::metadata ( ) const

virtual

Return the root node of the metadata attached to this image.

Available when the ImageView has the READ capability.

Exceptions

NotImplemented If the implementation does not support reading.

◆ read()

virtual void iolink::ImageView::read	(	const VectorXu64 &	index,
		void *	dst
	)

virtual

Read the data at the given index into a buffer.

Available when the ImageView has the READ capability.

Default implementation will call the readRegion method with a region of one pixel.

Parameters

index	the index of the sample to read.
dst	The buffer where read data will be copied.

◆ readRegion()

virtual void iolink::ImageView::readRegion	(	const RegionXu64 &	region,
		void *	dst
	)

virtual

Read a region of the image into a buffer.

Available when the ImageView has the READ capability.

Parameters

region	The region of the image to read from.
dst	The buffer where read data will be copied.

Exceptions

NotImplemented If the implementation does not support reading.

◆ reshape()

virtual void iolink::ImageView::reshape	(	const VectorXu64 &	shape,
		DataType	dataType
	)

virtual

Change the shape and sample data type of the image.

Available when the ImageView has the RESHAPE capability.

All the image's data is invalidated after this operation.

Parameters

shape	The new shape.
dataType	The new sample data type.

Exceptions

NotImplemented If the implementation does not support reshaping.

◆ setAlpha()

void iolink::ImageView::setAlpha ( bool value )

Shortcut to indicate the presence of an alpha channel into image properties.

Parameters

value TRUE if image has an alpha channel, FALSE otherwise

◆ setAxesInterpretation()

void iolink::ImageView::setAxesInterpretation ( const ImageType type )

Shortcut to set axes interpretation into image properties.

Parameters

type	Axes interpretation to set

◆ setBitDepth()

void iolink::ImageView::setBitDepth ( size_t bitDepth )

Shortcut to set sample bitdepth into image properties.

Parameters

bitDepth bitDepth to set

◆ setImageInterpretation()

void iolink::ImageView::setImageInterpretation ( const ImageInterpretation interpretation )

Shortcut to set Image interpretation into image properties.

Parameters

interpretation Image interpretation to set

◆ setMetadata()

virtual void iolink::ImageView::setMetadata ( std::shared_ptr< MetadataNode > metadata )

virtual

Attach a new metadata node to the image.

Available when the ImageView has the WRITE capability.

Exceptions

NotImplemented If the implementation does not support writing.

◆ setProperties()

virtual void iolink::ImageView::setProperties ( std::shared_ptr< const ImageProperties > properties )

virtual

Update the image's properties.

Available when the ImageView has the WRITE capability.

Exceptions

NotImplemented If the implementation does not support writing.

◆ setSpatialDirections()

void iolink::ImageView::setSpatialDirections ( const SpatialDirections & directions )

Shortcut to set spatial direcitons into image properties.

Parameters

directions spatial directions to set

◆ setSpatialOrigin()

void iolink::ImageView::setSpatialOrigin ( const Vector3d & origin )

Shortcut to set spatial origin into image properties.

Parameters

origin spatial origin to set

◆ setSpatialSpacing()

void iolink::ImageView::setSpatialSpacing ( const Vector3d & spacing )

Shortcut to set spatial spacing into image properties.

Parameters

spacing spatial spacing to set

◆ setSpatialUnit()

void iolink::ImageView::setSpatialUnit ( const std::string & unit )

Shortcut to set spatial unit into image properties.

Parameters

unit	spatial unit to set

◆ setValueRange()

void iolink::ImageView::setValueRange ( const Vector2d & range )

Shortcut to set sample value range into image properties.

Parameters

range value range to set

◆ shape()

virtual const VectorXu64& iolink::ImageView::shape ( )

pure virtual

Return the shape of the image, each component containing the size in this dimension.

Example:

A 2D image will return a vector with two dimension, the first being the number of columns, and the second being the number of rows.
A 3D image will return a vector with two dimension, the first being the number of columns, the second being the number of rows, and the third being the number of slices.

◆ spatialDirections()

const SpatialDirections& iolink::ImageView::spatialDirections ( )

Shortcut to access spatial directions from image properties.

Returns: spatial directions of the image

◆ spatialOrigin()

Vector3d iolink::ImageView::spatialOrigin ( )

Shortcut to access spatial origin from image properties.

Returns: spatial origin of the image

◆ spatialSpacing()

Vector3d iolink::ImageView::spatialSpacing ( )

Shortcut to access spatial spacing from image properties.

Returns: spatial spacing of the image

◆ spatialUnit()

std::string iolink::ImageView::spatialUnit ( )

Shortcut to access the spatial unit from image properties.

Returns: spatial unit of the image

◆ valueRange()

Vector2d iolink::ImageView::valueRange ( )

Shortcut to access the sample value range from image properties.

Returns: value range for the image samples

◆ write()

virtual void iolink::ImageView::write	(	const VectorXu64 &	index,
		const void *	src
	)

virtual

Write value from a buffer at the given index.

Available when the ImageView has the WRITE capability.

Default implementation will call the writeRegion method with a region of one pixel.

Parameters

index	The index of the image's sample to write.
src	The buffer containing the data that will be written.

◆ writeRegion()

virtual void iolink::ImageView::writeRegion	(	const RegionXu64 &	region,
		const void *	src
	)

virtual

Write a input buffer into a given region of the image.

Available when the ImageView has the WRITE capability.

Parameters

region	The region to write.
src	The buffer containing the data that will be written.

Exceptions

NotImplemented If the implementation does not support writing.

The documentation for this class was generated from the following file:

iolink/public/include/iolink/view/ImageView.h

Public Member Functions

Detailed Description

Member Function Documentation

◆ axesInterpretation()

◆ bitDepth()

◆ buffer()

◆ bufferReadOnly()

◆ bufferSize()

◆ hasAlpha()

◆ imageInterpretation()

◆ indexer()

◆ metadata()

◆ read()

◆ readRegion()

◆ reshape()

◆ setAlpha()

◆ setAxesInterpretation()

◆ setBitDepth()

◆ setImageInterpretation()

◆ setMetadata()

◆ setProperties()

◆ setSpatialDirections()

◆ setSpatialOrigin()

◆ setSpatialSpacing()

◆ setSpatialUnit()

◆ setValueRange()

◆ shape()

◆ spatialDirections()

◆ spatialOrigin()

◆ spatialSpacing()

◆ spatialUnit()

◆ valueRange()

◆ write()

◆ writeRegion()